Find Research Outputs

2018

Analysis of morphological changes of lamina cribrosa under acute intraocular pressure change

Ravier, M., Hong, S., Girot, C., Ishikawa, H., Tauber, J., Wollstein, G., Schuman, J., Fishbaugh, J. & Gerig, G., Jan 1 2018, Medical Image Computing and Computer Assisted Intervention – MICCAI 2018 - 21st International Conference, 2018, Proceedings. Fichtinger, G., Davatzikos, C., Alberola-López, C., Frangi, A. F. & Schnabel, J. A. (eds.). Springer Verlag, p. 364-371 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11071 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Lamina
Acute
Optical Coherence Tomography
Optical tomography
Sweep

Analysis of nonprocessive molecular motor transport using renewal reward theory

Miles, C. E., Lawley, S. D. & Keener, J. P., Jan 1 2018, In : SIAM Journal on Applied Mathematics. 78, 5, p. 2511-2532 22 p.

Research output: Contribution to journalArticle

Molecular Motor
Renewal
Reward
Stochastic Equations
Differential equations
1 Citations

Analytical Models for Seismic Repair of Bridge Columns Using Plastic Hinge Relocation

Wu, R. Y. & Pantelides, C. P., Jan 1 2018, Structures Congress 2018: Bridges, Transportation Structures, and Nonbuilding Structures - Selected Papers from the Structures Congress 2018. American Society of Civil Engineers (ASCE), Vol. 2018-April. p. 296-307 12 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Relocation
Hinges
Analytical models
Repair
Plastics

Analytical Phasing of Arbitrarily Oriented Arrays Using a Fast, Analytical Far-Field Calculation Method

Bernety, H. M., Venkatesh, S. & Schurig, D., Apr 6 2018, (Accepted/In press) In : IEEE Transactions on Antennas and Propagation.

Research output: Contribution to journalArticle

Microstrip antennas
Antenna arrays
Antennas
6 Citations

An analytical framework for whole-genome sequence association studies and its implications for autism spectrum disorder

Werling, D. M., Brand, H., An, J. Y., Stone, M. R., Zhu, L., Glessner, J. T., Collins, R. L., Dong, S., Layer, R. M., Markenscoff-Papadimitriou, E., Farrell, A., Schwartz, G. B., Wang, H. Z., Currall, B. B., Zhao, X., Dea, J., Duhn, C., Erdman, C. A., Gilson, M. C., Yadav, R. & 27 othersHandsaker, R. E., Kashin, S., Klei, L., Mandell, J. D., Nowakowski, T. J., Liu, Y., Pochareddy, S., Smith, L., Walker, M. F., Waterman, M. J., He, X., Kriegstein, A. R., Rubenstein, J. L., Sestan, N., McCarroll, S. A., Neale, B. M., Coon, H., Willsey, A. J., Buxbaum, J. D., Daly, M. J., State, M. W., Quinlan, A. R., Marth, G. T., Roeder, K., Devlin, B., Talkowski, M. E. & Sanders, S. J., May 1 2018, In : Nature Genetics. 50, 5, p. 727-736 10 p.

Research output: Contribution to journalArticle

Genome-Wide Association Study
Genomic Structural Variation
Nucleotides
Nucleic Acid Regulatory Sequences
Autistic Disorder
3 Citations

Anaplastic meningioma: An analysis of the National Cancer Database from 2004 to 2012

Orton, A., Frandsen, J., Jensen, R., Shrieve, D. C. & Suneja, G., Jun 1 2018, In : Journal of Neurosurgery. 128, 6, p. 1684-1689 6 p.

Research output: Contribution to journalArticle

Meningioma
Radiotherapy
Databases
Neoplasms
Survival
3 Citations

An astrocyte derived extracellular matrix coating reduces astrogliosis surrounding chronically implanted microelectrode arrays in rat cortex

Oakes, R. S., Polei, M. D., Skousen, J. L. & Tresco, P. A., Feb 1 2018, In : Biomaterials. 154, p. 1-11 11 p.

Research output: Contribution to journalArticle

Microelectrodes
Foreign Bodies
Astrocytes
Extracellular Matrix
Rats

An automated system for rapid cellular extraction from live zebrafish embryos and larvae: Development and application to genotyping

Lambert, C. J., Freshner, B. C., Chung, A., Stevenson, T. J., Bowles, D. M., Samuel, R., Gale, B. K. & Bonkowsky, J. L., Mar 1 2018, In : PLoS One. 13, 3, e0193180.

Research output: Contribution to journalArticle

Zebrafish
Danio rerio
genotyping
Embryonic Development
Larva
2 Citations

Andecaliximab/GS-5745 alone and combined with mFOLFOX6 in advanced gastric and gastroesophageal junction adenocarcinoma: Results from a phase I study

Shah, M. A., Starodub, A., Sharma, S., Berlin, J., Patel, M., Wainberg, Z. A., Chaves, J., Gordon, M., Windsor, K., Brachmann, C. B., Huang, X., Vosganian, G., Maltzman, J. D., Smith, V., Silverman, J. A., Lenz, H. J. & Bendell, J. C., Aug 15 2018, In : Clinical Cancer Research. 24, 16, p. 3829-3837 9 p.

Research output: Contribution to journalArticle

Esophagogastric Junction
Stomach
Adenocarcinoma
Matrix Metalloproteinase 9
Disease-Free Survival
1 Citations

Anderson localization at the hybridization gap in a plasmonic system

Balasubrahmaniyam, M., Nahata, A. & Mujumdar, S., Jul 11 2018, In : Physical Review B. 98, 2, 024202.

Research output: Contribution to journalArticle

disorders
Metals
Plasmons
Hybrid systems
Physics

An Economical Model for Simulating Turbulence Enhancement of Droplet Collisions and Coalescence

Krueger, S. K. & Kerstein, A. R., Aug 1 2018, In : Journal of Advances in Modeling Earth Systems. 10, 8, p. 1858-1881 24 p.

Research output: Contribution to journalArticle

coalescence
Coalescence
droplet
Turbulence
collision
1 Citations

An Electrically Tunable Terahertz Plasmonic Device Based on Shape Memory Alloys and Liquid Metals

Zhou, H., Zhang, T., Guruswamy, S. & Nahata, A., Jan 1 2018, (Accepted/In press) In : Advanced Optical Materials.

Research output: Contribution to journalArticle

shape memory alloys
liquid metals
Shape memory effect
Liquid metals
wire
4 Citations

An electromagnetic rotational energy harvester using sprung eccentric rotor, driven by pseudo-walking motion

Halim, M. A., Rantz, R., Zhang, Q., Gu, L., Yang, K. & Roundy, S., May 1 2018, In : Applied Energy. 217, p. 66-74 9 p.

Research output: Contribution to journalArticle

Harvesters
walking
Rotors
energy
Transducers

Anemia and adverse outcomes in a chronic obstructive pulmonary disease population with a high burden of comorbidities an analysis from SPIROMICS

on behalf of the SPIROMICS Investigators, Jun 1 2018, In : Annals of the American Thoracic Society. 15, 6, p. 710-717 8 p.

Research output: Contribution to journalArticle

Chronic Obstructive Pulmonary Disease
Comorbidity
Anemia
Outcome Assessment (Health Care)
Population

An empirical assessment of the short-term impacts of a reading of Deborah Zoe Laufer's drama Informed Consent on attitudes and intentions to participate in genetic research

Rothwell, E., Botkin, J. R., Cheek-O'Donnell, S., Wong, B., Case, G. A., Johnson, E., Matheson, T., Wilson, A., Robinson, N. R., Rawlings, J., Horejsi, B., Lopez, A. M. & Byington, C. L., Apr 5 2018, (Accepted/In press) In : AJOB Empirical Bioethics. p. 1-8 8 p.

Research output: Contribution to journalArticle

Drama
genetic research
Genetic Research
Informed Consent
drama

A net ecosystem carbon budget for snow dominated forested headwater catchments: linking water and carbon fluxes to critical zone carbon storage

Perdrial, J., Brooks, P. D., Swetnam, T., Lohse, K. A., Rasmussen, C., Litvak, M., Harpold, A. A., Zapata-Rios, X., Broxton, P., Mitra, B., Meixner, T., Condon, K., Huckle, D., Stielstra, C., Vázquez-Ortega, A., Lybrand, R., Holleran, M., Orem, C., Pelletier, J. & Chorover, J., Apr 21 2018, (Accepted/In press) In : Biogeochemistry. p. 1-19 19 p.

Research output: Contribution to journalArticle

carbon budget
carbon flux
Snow
headwater
Catchments

An Evaluation of Vancomycin Area Under the Curve Estimation Methods for Children Treated for Acute Pulmonary Exacerbations of Cystic Fibrosis Due to Methicillin-Resistant Staphylococcus aureus

Stockmann, C., Olson, J., Rashid, J., Lubsch, L., Young, D. C., Hersh, A. L., Frymoyer, A., Ampofo, K. K., Liu, X., Wang, Y., Sherwin, C. M. & Zobell, J. T., Jan 1 2018, (Accepted/In press) In : Journal of Clinical Pharmacology.

Research output: Contribution to journalArticle

Vancomycin
Methicillin-Resistant Staphylococcus aureus
Cystic Fibrosis
Area Under Curve
Pharmacokinetics
2 Citations

An Evidence Framework for Off-Patent Pharmaceutical Review (EFOR) for Health Technology Assessment in Emerging Markets

Brixner, D., Kaló, Z., Maniadakis, N., Kim, K. & Wijaya, K., Sep 1 2018, In : Value in Health Regional Issues. 16, p. 9-13 5 p.

Research output: Contribution to journalArticle

Biomedical Technology Assessment
Pharmaceutical Preparations
Outcome Assessment (Health Care)
Decision Making
Health technology assessment
Boiling point
reservoir rock
pyrolysis
source rock
Pyrolysis

A new route to finding bounds on the generalized spectrum of many physical operators

Milton, G. W., Jun 1 2018, In : Journal of Mathematical Physics. 59, 6, 061508.

Research output: Contribution to journalArticle

routes
Green's function
operators
Green's functions
Coercivity
new taxa
Skull
Geographical distribution
Skeleton
skull

An exome-wide sequencing study of lipid response to high-fat meal and fenofibrate in Caucasians from the GOLDN cohort

Geng, X., Irvin, M. R., Hidalgo, B., Aslibekyan, S., Srinivasasainagendra, V., An, P., Frazier-Wood, A. C., Tiwari, H. K., Dave, T., Ryan, K., Ordovas, J. M., Straka, R. J., Feitosa, M. F., Hopkins, P. N., Borecki, I., Province, M. A., Mitchell, B. D., Arnett, D. K. & Zhi, D., Jan 1 2018, In : Journal of Lipid Research. 59, 4, p. 722-729 8 p.

Research output: Contribution to journalArticle

Fenofibrate
Fats
Lipids
Triglycerides
Genes

An explicit variable-density projection method for low-mach reacting flows on structured uniform grids

Saad, T., Karam, M. & Sutherland, J. C., Jan 1 2018, 2018 Fluid Dynamics Conference. American Institute of Aeronautics and Astronautics Inc, AIAA, AIAA 2018-4266

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Mach number
Acoustics
Equations of state
Thermodynamics
Gas dynamics

anexVis: Visual analytics framework for analysis of RNA expression

Tran, D. T., Zhang, T., Stutsman, R., Might, M. B., Desai, U. R. & Balagurunathan, K., Jan 1 2018, In : Bioinformatics. 34, 14, p. 2510-2512 3 p.

Research output: Contribution to journalArticle

Visual Analytics
RNA
Glycosaminoglycans
Leverage
Pathway

Angiopoietin 2 Levels in the Risk Stratification and Mortality Outcome Prediction of Sepsis-Associated Coagulopathy

Statz, S., Sabal, G., Walborn, A., Williams, M., Hoppensteadt, D., Mosier, M., Rondina, M. & Fareed, J., Jan 1 2018, (Accepted/In press) In : Clinical and Applied Thrombosis/Hemostasis.

Research output: Contribution to journalArticle

Angiopoietin-2
Disseminated Intravascular Coagulation
Sepsis
Mortality
Intensive Care Units

An inflammatory transcriptional switch

Murtaugh, L. C. & MacDonald, R. J., Feb 22 2018, In : Nature. 554, 7693, p. 470-472 3 p.

Research output: Contribution to journalShort survey

An initiative using informatics to facilitate clinical research planning and recruitment in the VA health care system

Velarde, K. E., Romesser, J. M., Johnson, M. R., Clegg, D. O., Efimova, O., Oostema, S. J., Scehnet, J. S., DuVall, S. L. & Huang, G. D., Sep 1 2018, In : Contemporary Clinical Trials Communications. 11, p. 107-112 6 p.

Research output: Contribution to journalArticle

Veterans Health
Informatics
Veterans
Delivery of Health Care
Research
12 Citations

An Integrated TCGA Pan-Cancer Clinical Data Resource to Drive High-Quality Survival Outcome Analytics

The Cancer Genome Atlas Research Network, Apr 5 2018, In : Cell. 173, 2, p. 400-416.e11

Research output: Contribution to journalArticle

Translational Medical Research
Atlases
Proportional Hazards Models
Genome
Survival

An interactive NLP tool for signout note preparation

Trivedi, G., Handzel, R., Visweswaran, S., Chapman, W. & Hochheiser, H., Jul 24 2018, Proceedings - 2018 IEEE International Conference on Healthcare Informatics, ICHI 2018. Institute of Electrical and Electronics Engineers Inc., p. 426-428 3 p. 8419417

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Patient Handoff
Natural Language Processing
Processing

An investigation of the reduction of TiO2 by Mg in H2 atmosphere

Li, Q., Zhu, X., Zhang, Y., Fang, Z. Z., Zheng, S., Sun, P., Xia, Y., Li, P., Zhang, Y. & Zou, X., Jan 1 2018, (Accepted/In press) In : Chemical Engineering Science.

Research output: Contribution to journalArticle

Hydrogen
Energy utilization
Phase transitions
Metals
Oxygen

An In-Vitro Insertion-Force Study of Magnetically Guided Lateral-Wall Cochlear-Implant Electrode Arrays

Leon, L., Warren, F. M. & Abbott, J. J., Feb 1 2018, In : Otology and Neurotology. 39, 2, p. e63-e73

Research output: Contribution to journalArticle

Cochlear Implants
Electrodes
Cochlea
Magnets
In Vitro Techniques

Anisotropic radial layout for visualizing centrality and structure in graphs

Raj, M. & Whitaker, R. T., Jan 1 2018, Graph Drawing and Network Visualization - 25th International Symposium, GD 2017, Revised Selected Papers. Springer Verlag, p. 351-364 14 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10692 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Centrality
Layout
Visualization
Graph in graph theory
Vertex of a graph

An MLP-aware leakage-free memory controller

Vuong, A., Shafiee, A., Taassori, M. & Balasubramonian, R., Jun 2 2018, Proceedings of the 7th International Workshop on Hardware and Architectural Support for Security and Privacy, HASP 2018. Association for Computing Machinery, 4

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Data storage equipment
Controllers
Servers
Throughput

Anomalous electrical bistability in lateral grain rich polycrystalline molybdenum disulfide thin films

Sarswat, P. K., Kumar, P. & Free, M. L., Jan 1 2018, (Accepted/In press) In : Vacuum.

Research output: Contribution to journalArticle

molybdenum disulfides
Molybdenum
Charge transfer
Thin films
Dangling bonds

A non-autonomous function of the core PCP protein VANGL2 directs peripheral axon turning in the developing cochlea

Ghimire, S. R., Ratzan, E. M. & Deans, M. R., Jun 1 2018, In : Development (Cambridge). 145, 12, dev159012.

Research output: Contribution to journalArticle

Cell Polarity
Cochlea
Axons
Outer Auditory Hair Cells
Neurons

An operational semantic basis for building an OpenMP data race checker

Atzeni, S. & Gopalakrishnan, G., Aug 3 2018, Proceedings - 2018 IEEE 32nd International Parallel and Distributed Processing Symposium Workshops, IPDPSW 2018. Institute of Electrical and Electronics Engineers Inc., p. 395-404 10 p. 8425441

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Semantics
Concurrency
Language
Lung Volume Measurements
Systemic Scleroderma
Carbon Monoxide
Pulmonary Hypertension
Outcome Assessment (Health Care)

A novel AGGF1-PDGFRβ fusion in pediatric T-cell acute lymphoblastic leukemia

Zabriskie, M. S., Antelope, O., Verma, A. R., Draper, L. R., Eide, C. A., Pomicter, A. D., Tran, T. H., Druker, B. J., Tyner, J. W., Miles, R. R., Graham, J. M., Hwang, J. Y., Varley, K. E., Toydemir, R. M., Deininger, M. W., Raetz, E. A. & O’Hare, T., Jan 31 2018, In : Haematologica. 103, 2, p. e87-e91

Research output: Contribution to journalComment/debate

Precursor T-Cell Lymphoblastic Leukemia-Lymphoma
Pediatrics
1 Citations
fatigue life
Fatigue crack propagation
stress ratio
cracks
Fatigue of materials

A novel framework for the local extraction of extra-axial cerebrospinal fluid from MR brain images

Mostapha, M., Shen, M. D., Kim, S., Swanson, M., Collins, D. L., Fonov, V., Gerig, G., Piven, J. & Styner, M. A., Jan 1 2018, Medical Imaging 2018: Image Processing. SPIE, Vol. 10574. 105740V

Research output: Chapter in Book/Report/Conference proceedingConference contribution

cerebrospinal fluid
Cerebrospinal fluid
brain
Cerebrospinal Fluid
Brain

An overview of disparities in childhood cancer: Report on the Inaugural Symposium on Childhood Cancer Health Disparities, Houston, Texas, 2016

Scheurer, M. E., Lupo, P. J., Schüz, J., Spector, L. G., Wiemels, J. L., Aplenc, R., Gramatges, M. M., Schiffman, J. D., Pombo-de-Oliveira, M. S., Yang, J. J., Heck, J. E., Metayer, C., Orjuela-Grimm, M. A., Bona, K., Aristizabal, P., Austin, M. T., Rabin, K. R., Russell, H. V. & Poplack, D. G., Feb 17 2018, In : Pediatric Hematology and Oncology. 35, 2, p. 95-110 16 p.

Research output: Contribution to journalReview article

Health
Neoplasms
Pediatrics
Research

Antibiotic Prescriptions Associated With Dental-Related Emergency Department Visits

Roberts, R. M., Hersh, A. L., Shapiro, D. J., Fleming-Dutra, K. E. & Hicks, L. A., Jan 1 2018, (Accepted/In press) In : Annals of Emergency Medicine.

Research output: Contribution to journalArticle

Prescriptions
Hospital Emergency Service
Tooth
Anti-Bacterial Agents
International Classification of Diseases

Antibiotic shortages in pediatrics

Banerjee, R., Thurm, C. W., Fox, E. R. & Hersh, A. L., Nov 1 2018, In : Pediatrics. 142, 5, e20180858.

Research output: Contribution to journalReview article

Pediatrics
Anti-Bacterial Agents

Antibodies in Autoimmune Human Neurological Disease: Pathogenesis and Immunopathology

Williams, J. P., Carlson, N. G. & Greenlee, J. E., Jun 1 2018, In : Seminars in Neurology. 38, 3, p. 267-277 11 p.

Research output: Contribution to journalArticle

Antibodies
Autoantibodies
Antigens
Intracellular Membranes
Neurology
CD19 Antigens
Antigen Receptors
Lymphoma, Large B-Cell, Diffuse
Cell- and Tissue-Based Therapy
Immune System
12 Citations

Antifreeze Glycoproteins Bind Reversibly to Ice via Hydrophobic Groups

Mochizuki, K. & Molinero, V., Apr 11 2018, In : Journal of the American Chemical Society. 140, 14, p. 4803-4811 9 p.

Research output: Contribution to journalArticle

Antifreeze Proteins
Glycoproteins
Ice
Peptides
Disaccharides
1 Citations

Anti-inflammatory drug use and progressive supranuclear palsy

Marras, C., Cunningham, C. R., Hou, J., Proudfoot, J., Standaert, D. G., Juncos, J., Riley, D., Reich, S. G., Hall, D., Kluger, B., Bordelon, Y., Shprecher, D. R. & Litvan, I., Jan 1 2018, (Accepted/In press) In : Parkinsonism and Related Disorders.

Research output: Contribution to journalArticle

Progressive Supranuclear Palsy
Non-Steroidal Anti-Inflammatory Agents
Anti-Inflammatory Agents
Pharmaceutical Preparations
Ibuprofen
2 Citations

Anti-parasite behaviour of birds

Bush, S. E. & Clayton, D. H., Jul 19 2018, In : Philosophical Transactions of the Royal Society B: Biological Sciences. 373, 1751, 20170196.

Research output: Contribution to journalReview article

Birds
Parasites
parasites
birds
Maintenance

Antiplatelet antibody-induced thrombocytopenia does not correlate with megakaryocyte abnormalities in murine immune thrombocytopenia

Guo, L., Kapur, R., Aslam, R., Hunt, K., Hou, Y., Zufferey, A., Speck, E. R., Rondina, M. T., Lazarus, A. H., Ni, H. & Semple, J. W., Jul 1 2018, In : Scandinavian Journal of Immunology. 88, 1, e12678.

Research output: Contribution to journalArticle

Idiopathic Thrombocytopenic Purpura
Megakaryocytes
Thrombocytopenia
Antibodies
Bone Marrow

Antithrombotic drugs in cardiovascular medicine: A year in review

Ibrahim, H., Rondina, M. & Welt, F. G. P., Jul 1 2018, In : Current Opinion in Cardiology. 33, 4, p. 369-374 6 p.

Research output: Contribution to journalReview article

Cardiovascular Agents
Medicine
Safety
Cardiovascular Diseases
Therapeutics